cellranger software (10X Genomics)
86
Structured Review
10X Genomics
cellranger software
Cellranger Software, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cellranger+software/pm42277059-369-10-13
Average 86 stars, based on 1 article reviews
Cellranger Software, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cellranger+software/pm42277059-369-10-13
Average 86 stars, based on 1 article reviews
cellranger software - by Bioz Stars,
2026-10
86/100 stars
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Software:Article Title: A targetable dependency on nonsense-mediated decay for proteostasis and immune control in small cell lung cancer Article Snippet: .. Data processing was performed with Article Title: Flow-mediated endothelial remodeling and inflammation drive developmental vascular susceptibility in ldlr loss of function. Article Snippet: Single-cell RNA sequencing (scRNA-seq) of embryonic zebrafish cells and HAECs ScRNA-seq was performed on embryonic zebrafish cells and HAECs using the Chromium single cell 3’ v3 protocol (10x Genomics) according to the manufacturer’s instructions. cDNA libraries were prepared for sequencing to capture transcriptomic profiles at single-cell resolution. .. Processed data files, including the mapped barcode, feature and matrix files were generated using Article Title: Multi-omics analysis of type II diabetic wound healing reveals CD44-mediated immune cell crosstalk dysfunction in mice and humans Article Snippet: .. Raw scRNAseq data from the six samples (ND_3, ND_6, ND_10, db_3, db_6, db_10) was individually de-multiplexed and aligned to reference mouse genome GRCm38 (mm10) using Article Title: Heterogeneity of the adult mammalian forebrain neurogenic ependyma: A comprehensive cellular map Article Snippet: Single cell gel beads were loaded onto a Chromium controller (10× Genomics) for sequencing using a 75-cycle run kit Illumina HiSeq X platform (San Diego, CA, USA) with 150 bp paired-end reads. .. Raw reads were processed into gene expression profiles by Article Title: Plasmatic CXCL13 as a biomarker of primary resistance to immunotherapy and impaired peripheral immunity in non-small cell lung cancer. Article Snippet: Single-cell RNAseq and spatial transcriptomics Single-cell RNA sequencing was performed on 15 representative blood samples at baseline of NSCLC NADIM cohort using the Chromium Next GEM Single Cell 5’ platform (10x Genomics). .. Data was processed with Article Title: Cell-type- and state-resolved transcriptomics uncovers distinct T cell and monocyte dysregulation in multiple sclerosis. Article Snippet: Independent sequencing libraries were pooled and sequenced on the Illumina NovaSeq 6000 with S4 flow cell according to the standard manufacturer’s protocol (Illumina, San Diego, CA) using paired-end, dual-index sequencing with 28 cycles for read 1, 10 cycles for the i7 index, 10 cycles for the i5 index, and 90 cycles for read 2. .. FASTQ files were preprocessed with the Article Title: HE4 drives PD-L1 expression in myeloid cells via IFN-γR-JAK-STAT3 signaling to promote tumor immune evasion Article Snippet: 10 × Genomics single-cell capture, Illumina library construction, preprocessing of scRNA-seq data, integration, dimensionality reduction and clustering were performed by Capital Biotech (Beijing, China). .. In brief, Sequencing:Article Title: A targetable dependency on nonsense-mediated decay for proteostasis and immune control in small cell lung cancer Article Snippet: .. Data processing was performed with Article Title: HE4 drives PD-L1 expression in myeloid cells via IFN-γR-JAK-STAT3 signaling to promote tumor immune evasion Article Snippet: 10 × Genomics single-cell capture, Illumina library construction, preprocessing of scRNA-seq data, integration, dimensionality reduction and clustering were performed by Capital Biotech (Beijing, China). .. In brief, Generated:Article Title: Flow-mediated endothelial remodeling and inflammation drive developmental vascular susceptibility in ldlr loss of function. Article Snippet: Single-cell RNA sequencing (scRNA-seq) of embryonic zebrafish cells and HAECs ScRNA-seq was performed on embryonic zebrafish cells and HAECs using the Chromium single cell 3’ v3 protocol (10x Genomics) according to the manufacturer’s instructions. cDNA libraries were prepared for sequencing to capture transcriptomic profiles at single-cell resolution. .. Processed data files, including the mapped barcode, feature and matrix files were generated using Gene Expression:Article Title: Heterogeneity of the adult mammalian forebrain neurogenic ependyma: A comprehensive cellular map Article Snippet: Single cell gel beads were loaded onto a Chromium controller (10× Genomics) for sequencing using a 75-cycle run kit Illumina HiSeq X platform (San Diego, CA, USA) with 150 bp paired-end reads. .. Raw reads were processed into gene expression profiles by other:Article Title: Natural killer cell-mediated immunosurveillance modulates liver cancer evolution through cancer stemness enhancement and lipid metabolism reprogramming. Article Snippet: Libraries were sequenced on an Illumina NovaSeq 6000 sequencing system (paired-end multiplexing run,150bp) by LC-Bio Technology co.ltd. (HangZhou,China) at a minimum depth of 20,000 reads per cell. Derivative Assay:Article Title: HE4 drives PD-L1 expression in myeloid cells via IFN-γR-JAK-STAT3 signaling to promote tumor immune evasion Article Snippet: 10 × Genomics single-cell capture, Illumina library construction, preprocessing of scRNA-seq data, integration, dimensionality reduction and clustering were performed by Capital Biotech (Beijing, China). .. In brief, |